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Enum: NodeCategoryEnum

URI: NodeCategoryEnum

Permissible Values

Value Meaning Description
biolink:NamedThing None
biolink:Attribute None
biolink:OrganismTaxon None
biolink:Event None
biolink:AdministrativeEntity None
biolink:InformationContentEntity None
biolink:PhysicalEntity None
biolink:Activity None
biolink:Procedure None
biolink:Phenomenon None
biolink:Device None
biolink:DiagnosticAid None
biolink:PlanetaryEntity None
biolink:BiologicalEntity None
biolink:ChemicalEntity None
biolink:ClinicalEntity None
biolink:Treatment None
biolink:ClinicalTrial None
biolink:ClinicalIntervention None
biolink:Hospitalization None
biolink:MolecularEntity None
biolink:ChemicalMixture None
biolink:EnvironmentalFoodContaminant None
biolink:FoodAdditive None
biolink:MolecularMixture None
biolink:ComplexMolecularMixture None
biolink:ProcessedMaterial None
biolink:Food None
biolink:Drug None
biolink:SmallMolecule None
biolink:NucleicAcidEntity None
biolink:RegulatoryRegion None
biolink:BiologicalProcessOrActivity None
biolink:GeneticInheritance None
biolink:OrganismalEntity None
biolink:DiseaseOrPhenotypicFeature None
biolink:Gene None
biolink:MacromolecularComplex None
biolink:NucleosomeModification None
biolink:Genome None
biolink:Exon None
biolink:Transcript None
biolink:CodingSequence None
biolink:Polypeptide None
biolink:ProteinDomain None
biolink:PosttranslationalModification None
biolink:ProteinFamily None
biolink:NucleicAcidSequenceMotif None
biolink:GeneFamily None
biolink:Genotype None
biolink:Haplotype None
biolink:SequenceVariant None
biolink:ReagentTargetedGene None
biolink:Snv None
biolink:Protein None
biolink:ProteinIsoform None
biolink:RNAProduct None
biolink:RNAProductIsoform None
biolink:NoncodingRNAProduct None
biolink:MicroRNA None
biolink:SiRNA None
biolink:Disease None
biolink:PhenotypicFeature None
biolink:BehavioralFeature None
biolink:ClinicalFinding None
biolink:Bacterium None
biolink:Virus None
biolink:CellularOrganism None
biolink:LifeStage None
biolink:IndividualOrganism None
biolink:PopulationOfIndividualOrganisms None
biolink:AnatomicalEntity None
biolink:CellLine None
biolink:CellularComponent None
biolink:Cell None
biolink:GrossAnatomicalStructure None
biolink:PathologicalAnatomicalStructure None
biolink:StudyPopulation None
biolink:Cohort None
biolink:Case None
biolink:Mammal None
biolink:Plant None
biolink:Invertebrate None
biolink:Vertebrate None
biolink:Fungus None
biolink:Human None
biolink:MolecularActivity None
biolink:BiologicalProcess None
biolink:Pathway None
biolink:PhysiologicalProcess None
biolink:Behavior None
biolink:PathologicalProcess None
biolink:AccessibleDnaRegion None
biolink:TranscriptionFactorBindingSite None
biolink:EnvironmentalProcess None
biolink:EnvironmentalFeature None
biolink:GeographicLocation None
biolink:GeographicLocationAtTime None
biolink:Study None
biolink:MaterialSample None
biolink:StudyResult None
biolink:StudyVariable None
biolink:CommonDataElement None
biolink:Dataset None
biolink:DatasetDistribution None
biolink:DatasetVersion None
biolink:DatasetSummary None
biolink:ConfidenceLevel None
biolink:EvidenceType None
biolink:Publication None
biolink:RetrievalSource None
biolink:Book None
biolink:BookChapter None
biolink:Serial None
biolink:Article None
biolink:Patent None
biolink:WebPage None
biolink:PreprintPublication None
biolink:DrugLabel None
biolink:JournalArticle None
biolink:ConceptCountAnalysisResult None
biolink:ObservedExpectedFrequencyAnalysisResult None
biolink:RelativeFrequencyAnalysisResult None
biolink:TextMiningResult None
biolink:ChiSquaredAnalysisResult None
biolink:LogOddsAnalysisResult None
biolink:Agent None
biolink:ChemicalRole None
biolink:BiologicalSex None
biolink:SeverityValue None
biolink:OrganismAttribute None
biolink:Zygosity None
biolink:ClinicalAttribute None
biolink:SocioeconomicAttribute None
biolink:GenomicBackgroundExposure None
biolink:PathologicalProcessExposure None
biolink:PathologicalAnatomicalExposure None
biolink:DiseaseOrPhenotypicFeatureExposure None
biolink:ChemicalExposure None
biolink:ComplexChemicalExposure None
biolink:BioticExposure None
biolink:EnvironmentalExposure None
biolink:BehavioralExposure None
biolink:SocioeconomicExposure None
biolink:GeographicExposure None
biolink:DrugExposure None
biolink:DrugToGeneInteractionExposure None
biolink:ClinicalMeasurement None
biolink:ClinicalModifier None
biolink:ClinicalCourse None
biolink:Onset None
biolink:PhenotypicQuality None
biolink:PhenotypicSex None
biolink:GenotypicSex None

Slots

Name Description
category Biolink category of the entity
all_categories All categories associated with the entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/everycure-org/matrix-schema

LinkML Source

name: NodeCategoryEnum
from_schema: https://w3id.org/everycure-org/matrix-schema
rank: 1000
permissible_values:
  biolink:NamedThing:
    text: biolink:NamedThing
    title: NAMED_THING
  biolink:Attribute:
    text: biolink:Attribute
    title: ATTRIBUTE
  biolink:OrganismTaxon:
    text: biolink:OrganismTaxon
    title: ORGANISM_TAXON
  biolink:Event:
    text: biolink:Event
    title: EVENT
  biolink:AdministrativeEntity:
    text: biolink:AdministrativeEntity
    title: ADMINISTRATIVE_ENTITY
  biolink:InformationContentEntity:
    text: biolink:InformationContentEntity
    title: INFORMATION_CONTENT_ENTITY
  biolink:PhysicalEntity:
    text: biolink:PhysicalEntity
    title: PHYSICAL_ENTITY
  biolink:Activity:
    text: biolink:Activity
    title: ACTIVITY
  biolink:Procedure:
    text: biolink:Procedure
    title: PROCEDURE
  biolink:Phenomenon:
    text: biolink:Phenomenon
    title: PHENOMENON
  biolink:Device:
    text: biolink:Device
    title: DEVICE
  biolink:DiagnosticAid:
    text: biolink:DiagnosticAid
    title: DIAGNOSTIC_AID
  biolink:PlanetaryEntity:
    text: biolink:PlanetaryEntity
    title: PLANETARY_ENTITY
  biolink:BiologicalEntity:
    text: biolink:BiologicalEntity
    title: BIOLOGICAL_ENTITY
  biolink:ChemicalEntity:
    text: biolink:ChemicalEntity
    title: CHEMICAL_ENTITY
  biolink:ClinicalEntity:
    text: biolink:ClinicalEntity
    title: CLINICAL_ENTITY
  biolink:Treatment:
    text: biolink:Treatment
    title: TREATMENT
  biolink:ClinicalTrial:
    text: biolink:ClinicalTrial
    title: CLINICAL_TRIAL
  biolink:ClinicalIntervention:
    text: biolink:ClinicalIntervention
    title: CLINICAL_INTERVENTION
  biolink:Hospitalization:
    text: biolink:Hospitalization
    title: HOSPITALIZATION
  biolink:MolecularEntity:
    text: biolink:MolecularEntity
    title: MOLECULAR_ENTITY
  biolink:ChemicalMixture:
    text: biolink:ChemicalMixture
    title: CHEMICAL_MIXTURE
  biolink:EnvironmentalFoodContaminant:
    text: biolink:EnvironmentalFoodContaminant
    title: ENVIRONMENTAL_FOOD_CONTAMINANT
  biolink:FoodAdditive:
    text: biolink:FoodAdditive
    title: FOOD_ADDITIVE
  biolink:MolecularMixture:
    text: biolink:MolecularMixture
    title: MOLECULAR_MIXTURE
  biolink:ComplexMolecularMixture:
    text: biolink:ComplexMolecularMixture
    title: COMPLEX_MOLECULAR_MIXTURE
  biolink:ProcessedMaterial:
    text: biolink:ProcessedMaterial
    title: PROCESSED_MATERIAL
  biolink:Food:
    text: biolink:Food
    title: FOOD
  biolink:Drug:
    text: biolink:Drug
    title: DRUG
  biolink:SmallMolecule:
    text: biolink:SmallMolecule
    title: SMALL_MOLECULE
  biolink:NucleicAcidEntity:
    text: biolink:NucleicAcidEntity
    title: NUCLEIC_ACID_ENTITY
  biolink:RegulatoryRegion:
    text: biolink:RegulatoryRegion
    title: REGULATORY_REGION
  biolink:BiologicalProcessOrActivity:
    text: biolink:BiologicalProcessOrActivity
    title: BIOLOGICAL_PROCESS_OR_ACTIVITY
  biolink:GeneticInheritance:
    text: biolink:GeneticInheritance
    title: GENETIC_INHERITANCE
  biolink:OrganismalEntity:
    text: biolink:OrganismalEntity
    title: ORGANISMAL_ENTITY
  biolink:DiseaseOrPhenotypicFeature:
    text: biolink:DiseaseOrPhenotypicFeature
    title: DISEASE_OR_PHENOTYPIC_FEATURE
  biolink:Gene:
    text: biolink:Gene
    title: GENE
  biolink:MacromolecularComplex:
    text: biolink:MacromolecularComplex
    title: MACROMOLECULAR_COMPLEX
  biolink:NucleosomeModification:
    text: biolink:NucleosomeModification
    title: NUCLEOSOME_MODIFICATION
  biolink:Genome:
    text: biolink:Genome
    title: GENOME
  biolink:Exon:
    text: biolink:Exon
    title: EXON
  biolink:Transcript:
    text: biolink:Transcript
    title: TRANSCRIPT
  biolink:CodingSequence:
    text: biolink:CodingSequence
    title: CODING_SEQUENCE
  biolink:Polypeptide:
    text: biolink:Polypeptide
    title: POLYPEPTIDE
  biolink:ProteinDomain:
    text: biolink:ProteinDomain
    title: PROTEIN_DOMAIN
  biolink:PosttranslationalModification:
    text: biolink:PosttranslationalModification
    title: POSTTRANSLATIONAL_MODIFICATION
  biolink:ProteinFamily:
    text: biolink:ProteinFamily
    title: PROTEIN_FAMILY
  biolink:NucleicAcidSequenceMotif:
    text: biolink:NucleicAcidSequenceMotif
    title: NUCLEIC_ACID_SEQUENCE_MOTIF
  biolink:GeneFamily:
    text: biolink:GeneFamily
    title: GENE_FAMILY
  biolink:Genotype:
    text: biolink:Genotype
    title: GENOTYPE
  biolink:Haplotype:
    text: biolink:Haplotype
    title: HAPLOTYPE
  biolink:SequenceVariant:
    text: biolink:SequenceVariant
    title: SEQUENCE_VARIANT
  biolink:ReagentTargetedGene:
    text: biolink:ReagentTargetedGene
    title: REAGENT_TARGETED_GENE
  biolink:Snv:
    text: biolink:Snv
    title: SNV
  biolink:Protein:
    text: biolink:Protein
    title: PROTEIN
  biolink:ProteinIsoform:
    text: biolink:ProteinIsoform
    title: PROTEIN_ISOFORM
  biolink:RNAProduct:
    text: biolink:RNAProduct
    title: RNA_PRODUCT
  biolink:RNAProductIsoform:
    text: biolink:RNAProductIsoform
    title: RNA_PRODUCT_ISOFORM
  biolink:NoncodingRNAProduct:
    text: biolink:NoncodingRNAProduct
    title: NONCODING_RNA_PRODUCT
  biolink:MicroRNA:
    text: biolink:MicroRNA
    title: MICRORNA
  biolink:SiRNA:
    text: biolink:SiRNA
    title: SIRNA
  biolink:Disease:
    text: biolink:Disease
    title: DISEASE
  biolink:PhenotypicFeature:
    text: biolink:PhenotypicFeature
    title: PHENOTYPIC_FEATURE
  biolink:BehavioralFeature:
    text: biolink:BehavioralFeature
    title: BEHAVIORAL_FEATURE
  biolink:ClinicalFinding:
    text: biolink:ClinicalFinding
    title: CLINICAL_FINDING
  biolink:Bacterium:
    text: biolink:Bacterium
    title: BACTERIUM
  biolink:Virus:
    text: biolink:Virus
    title: VIRUS
  biolink:CellularOrganism:
    text: biolink:CellularOrganism
    title: CELLULAR_ORGANISM
  biolink:LifeStage:
    text: biolink:LifeStage
    title: LIFE_STAGE
  biolink:IndividualOrganism:
    text: biolink:IndividualOrganism
    title: INDIVIDUAL_ORGANISM
  biolink:PopulationOfIndividualOrganisms:
    text: biolink:PopulationOfIndividualOrganisms
    title: POPULATION_OF_INDIVIDUAL_ORGANISMS
  biolink:AnatomicalEntity:
    text: biolink:AnatomicalEntity
    title: ANATOMICAL_ENTITY
  biolink:CellLine:
    text: biolink:CellLine
    title: CELL_LINE
  biolink:CellularComponent:
    text: biolink:CellularComponent
    title: CELLULAR_COMPONENT
  biolink:Cell:
    text: biolink:Cell
    title: CELL
  biolink:GrossAnatomicalStructure:
    text: biolink:GrossAnatomicalStructure
    title: GROSS_ANATOMICAL_STRUCTURE
  biolink:PathologicalAnatomicalStructure:
    text: biolink:PathologicalAnatomicalStructure
    title: PATHOLOGICAL_ANATOMICAL_STRUCTURE
  biolink:StudyPopulation:
    text: biolink:StudyPopulation
    title: STUDY_POPULATION
  biolink:Cohort:
    text: biolink:Cohort
    title: COHORT
  biolink:Case:
    text: biolink:Case
    title: CASE
  biolink:Mammal:
    text: biolink:Mammal
    title: MAMMAL
  biolink:Plant:
    text: biolink:Plant
    title: PLANT
  biolink:Invertebrate:
    text: biolink:Invertebrate
    title: INVERTEBRATE
  biolink:Vertebrate:
    text: biolink:Vertebrate
    title: VERTEBRATE
  biolink:Fungus:
    text: biolink:Fungus
    title: FUNGUS
  biolink:Human:
    text: biolink:Human
    title: HUMAN
  biolink:MolecularActivity:
    text: biolink:MolecularActivity
    title: MOLECULAR_ACTIVITY
  biolink:BiologicalProcess:
    text: biolink:BiologicalProcess
    title: BIOLOGICAL_PROCESS
  biolink:Pathway:
    text: biolink:Pathway
    title: PATHWAY
  biolink:PhysiologicalProcess:
    text: biolink:PhysiologicalProcess
    title: PHYSIOLOGICAL_PROCESS
  biolink:Behavior:
    text: biolink:Behavior
    title: BEHAVIOR
  biolink:PathologicalProcess:
    text: biolink:PathologicalProcess
    title: PATHOLOGICAL_PROCESS
  biolink:AccessibleDnaRegion:
    text: biolink:AccessibleDnaRegion
    title: ACCESSIBLE_DNA_REGION
  biolink:TranscriptionFactorBindingSite:
    text: biolink:TranscriptionFactorBindingSite
    title: TRANSCRIPTION_FACTOR_BINDING_SITE
  biolink:EnvironmentalProcess:
    text: biolink:EnvironmentalProcess
    title: ENVIRONMENTAL_PROCESS
  biolink:EnvironmentalFeature:
    text: biolink:EnvironmentalFeature
    title: ENVIRONMENTAL_FEATURE
  biolink:GeographicLocation:
    text: biolink:GeographicLocation
    title: GEOGRAPHIC_LOCATION
  biolink:GeographicLocationAtTime:
    text: biolink:GeographicLocationAtTime
    title: GEOGRAPHIC_LOCATION_AT_TIME
  biolink:Study:
    text: biolink:Study
    title: STUDY
  biolink:MaterialSample:
    text: biolink:MaterialSample
    title: MATERIAL_SAMPLE
  biolink:StudyResult:
    text: biolink:StudyResult
    title: STUDY_RESULT
  biolink:StudyVariable:
    text: biolink:StudyVariable
    title: STUDY_VARIABLE
  biolink:CommonDataElement:
    text: biolink:CommonDataElement
    title: COMMON_DATA_ELEMENT
  biolink:Dataset:
    text: biolink:Dataset
    title: DATASET
  biolink:DatasetDistribution:
    text: biolink:DatasetDistribution
    title: DATASET_DISTRIBUTION
  biolink:DatasetVersion:
    text: biolink:DatasetVersion
    title: DATASET_VERSION
  biolink:DatasetSummary:
    text: biolink:DatasetSummary
    title: DATASET_SUMMARY
  biolink:ConfidenceLevel:
    text: biolink:ConfidenceLevel
    title: CONFIDENCE_LEVEL
  biolink:EvidenceType:
    text: biolink:EvidenceType
    title: EVIDENCE_TYPE
  biolink:Publication:
    text: biolink:Publication
    title: PUBLICATION
  biolink:RetrievalSource:
    text: biolink:RetrievalSource
    title: RETRIEVAL_SOURCE
  biolink:Book:
    text: biolink:Book
    title: BOOK
  biolink:BookChapter:
    text: biolink:BookChapter
    title: BOOK_CHAPTER
  biolink:Serial:
    text: biolink:Serial
    title: SERIAL
  biolink:Article:
    text: biolink:Article
    title: ARTICLE
  biolink:Patent:
    text: biolink:Patent
    title: PATENT
  biolink:WebPage:
    text: biolink:WebPage
    title: WEB_PAGE
  biolink:PreprintPublication:
    text: biolink:PreprintPublication
    title: PREPRINT_PUBLICATION
  biolink:DrugLabel:
    text: biolink:DrugLabel
    title: DRUG_LABEL
  biolink:JournalArticle:
    text: biolink:JournalArticle
    title: JOURNAL_ARTICLE
  biolink:ConceptCountAnalysisResult:
    text: biolink:ConceptCountAnalysisResult
    title: CONCEPT_COUNT_ANALYSIS_RESULT
  biolink:ObservedExpectedFrequencyAnalysisResult:
    text: biolink:ObservedExpectedFrequencyAnalysisResult
    title: OBSERVED_EXPECTED_FREQUENCY_ANALYSIS_RESULT
  biolink:RelativeFrequencyAnalysisResult:
    text: biolink:RelativeFrequencyAnalysisResult
    title: RELATIVE_FREQUENCY_ANALYSIS_RESULT
  biolink:TextMiningResult:
    text: biolink:TextMiningResult
    title: TEXT_MINING_RESULT
  biolink:ChiSquaredAnalysisResult:
    text: biolink:ChiSquaredAnalysisResult
    title: CHI_SQUARED_ANALYSIS_RESULT
  biolink:LogOddsAnalysisResult:
    text: biolink:LogOddsAnalysisResult
    title: LOG_ODDS_ANALYSIS_RESULT
  biolink:Agent:
    text: biolink:Agent
    title: AGENT
  biolink:ChemicalRole:
    text: biolink:ChemicalRole
    title: CHEMICAL_ROLE
  biolink:BiologicalSex:
    text: biolink:BiologicalSex
    title: BIOLOGICAL_SEX
  biolink:SeverityValue:
    text: biolink:SeverityValue
    title: SEVERITY_VALUE
  biolink:OrganismAttribute:
    text: biolink:OrganismAttribute
    title: ORGANISM_ATTRIBUTE
  biolink:Zygosity:
    text: biolink:Zygosity
    title: ZYGOSITY
  biolink:ClinicalAttribute:
    text: biolink:ClinicalAttribute
    title: CLINICAL_ATTRIBUTE
  biolink:SocioeconomicAttribute:
    text: biolink:SocioeconomicAttribute
    title: SOCIOECONOMIC_ATTRIBUTE
  biolink:GenomicBackgroundExposure:
    text: biolink:GenomicBackgroundExposure
    title: GENOMIC_BACKGROUND_EXPOSURE
  biolink:PathologicalProcessExposure:
    text: biolink:PathologicalProcessExposure
    title: PATHOLOGICAL_PROCESS_EXPOSURE
  biolink:PathologicalAnatomicalExposure:
    text: biolink:PathologicalAnatomicalExposure
    title: PATHOLOGICAL_ANATOMICAL_EXPOSURE
  biolink:DiseaseOrPhenotypicFeatureExposure:
    text: biolink:DiseaseOrPhenotypicFeatureExposure
    title: DISEASE_OR_PHENOTYPIC_FEATURE_EXPOSURE
  biolink:ChemicalExposure:
    text: biolink:ChemicalExposure
    title: CHEMICAL_EXPOSURE
  biolink:ComplexChemicalExposure:
    text: biolink:ComplexChemicalExposure
    title: COMPLEX_CHEMICAL_EXPOSURE
  biolink:BioticExposure:
    text: biolink:BioticExposure
    title: BIOTIC_EXPOSURE
  biolink:EnvironmentalExposure:
    text: biolink:EnvironmentalExposure
    title: ENVIRONMENTAL_EXPOSURE
  biolink:BehavioralExposure:
    text: biolink:BehavioralExposure
    title: BEHAVIORAL_EXPOSURE
  biolink:SocioeconomicExposure:
    text: biolink:SocioeconomicExposure
    title: SOCIOECONOMIC_EXPOSURE
  biolink:GeographicExposure:
    text: biolink:GeographicExposure
    title: GEOGRAPHIC_EXPOSURE
  biolink:DrugExposure:
    text: biolink:DrugExposure
    title: DRUG_EXPOSURE
  biolink:DrugToGeneInteractionExposure:
    text: biolink:DrugToGeneInteractionExposure
    title: DRUG_TO_GENE_INTERACTION_EXPOSURE
  biolink:ClinicalMeasurement:
    text: biolink:ClinicalMeasurement
    title: CLINICAL_MEASUREMENT
  biolink:ClinicalModifier:
    text: biolink:ClinicalModifier
    title: CLINICAL_MODIFIER
  biolink:ClinicalCourse:
    text: biolink:ClinicalCourse
    title: CLINICAL_COURSE
  biolink:Onset:
    text: biolink:Onset
    title: ONSET
  biolink:PhenotypicQuality:
    text: biolink:PhenotypicQuality
    title: PHENOTYPIC_QUALITY
  biolink:PhenotypicSex:
    text: biolink:PhenotypicSex
    title: PHENOTYPIC_SEX
  biolink:GenotypicSex:
    text: biolink:GenotypicSex
    title: GENOTYPIC_SEX